As this is supposed to be a low mileage engine, I would pull the engine, remove the pan and heads and start checking things. First remove the bad rod and piston, very unlikely that the crank is undamaged. At the very least have the engine fully disassembled and tanked so it can go back together free of metal shavings. Then measure the bores for taper. Given it is a low mileage unit, the bores might still be ok. At this point, if the bores are within spec's, you might be able to install a fresh crank kit, rings and gaskets and put it back together. Trust you rebuilder on this. There was something clearly wrong with this engine that caused it to fail after such a short time and it could be a lot of things. Poorly balanced crank shafts are a leading cause of bearing failure as is low oil pressure. Be sure to install a new oil pump as part of the repair. A lot of "rebuilt" engines have had a set of rings and bearings installed in them to freshen them up. This low end rebuild approach usually ends badly as you now are no doubt aware.
Dave